PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.L007800.1
Common NamePHAVU_L007800g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 549aa    MW: 60236 Da    PI: 8.3268
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.L007800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-0585107123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+k F r  nL+ H r H
  Phvul.L007800.1  85 FVCEICNKGFQRDQNLQLHRRGH 107
                      89*******************88 PP

2zf-C2H216.13.2e-05161183123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H++t+
  Phvul.L007800.1 161 WKCDKCSKRYAVQSDWKAHQKTC 183
                      58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.28E-884107No hitNo description
Gene3DG3DSA:3.30.160.601.8E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94985107IPR007087Zinc finger, C2H2
SMARTSM003550.01785107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM0035575126156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.2E-6149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.28E-8156182No hitNo description
SMARTSM0035589161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MSNISGDEGS LSSANTVEEV HQESEQQQPQ NRHGSSSGAC NTNSSTSQQQ QQQSTKKKRN  60
LPGTPDPNAE VIALSPTTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRPSNE  120
VKKRVYVCPE PSCVHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKRY AVQSDWKAHQ  180
KTCGTREYKC DCGTIFARRD SFITHRAFCD ALTEENNRVN PSLTTGASMT PSLQNELQDL  240
MATMPLSTSP NNAVPEFNSN YDPSKSPLKT LSQQHLVPMP FKSMSMRGCM SSTTSGTLFG  300
GPKNVSLPSS STLQLSTNNS HTFNYFQDSK NAAASAHMSA TALLQKAAQM GAAATNNSIN  360
SPTMMQKSFV SGMTGPDPNH NPSSYDPFHP PHSDDQSHMA GISGAGAFTN QFFYKGQQEI  420
SVILDSNTSD MGIFGAMFMG NEHNQGVMKN VEQEVGANGS GLIHRRDVSE GNPMGDSRFG  480
GGDMTRVHDF LGVGGATSRA GSLHETQKQQ QQSLELEALT HQRLQMINHF HHHLPHGDSA  540
MEKSIWDI*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163889.10.0hypothetical protein PHAVU_L007800g
SwissprotQ9SCQ61e-114IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLV7D2F30.0V7D2F3_PHAVU; Uncharacterized protein
STRINGGLYMA02G17293.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-106indeterminate(ID)-domain 2